Seminars, conferences and workshops

Since 2016

• Kinetic assumptions in Boolean networks: a case for buffering. BIOSS virtual seminar, online (2021)
• Qualitative modeling of the immune response: from mechanisms to populations. CSB seminar at HU Berlin, Berlin, Germany (2020)
• Qualitative modeling of the immune response: from mechanisms to populations. Symbiose Seminar, Rennes, France (2020)
• Methods and tools for the qualitative modeling of the immune response. Public Lifeware seminar, Saclay, France (2019)
• Dynamic modeling of cell populations with UPMaBoSS. Journée annuelle du GT BIOSS, Paris, France (2019)
• The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks. ICSB workshop, Okinawa, Japan (2019)
• From states to patterns: trapspaces and implicants. Workshop: Theory and applications of Boolean interaction networks, Berlin, Gernany (2019)
• Accessible and Reproducible Analyses with the CoLoMoTo notebook. BC2 workshop, Basel, Switzerland (2019)
• Dynamical modeling of cell populations with UpPMaBoSS. MABios invited seminar, Marseilles, France (2019)
• Organizing the 2nd ICSB workshop on “Systems Biology of Transcription Regulation”. Lyon, France (2018)
• Logical modelling and analysis of cellular regulatory networks with GINsim 3.0. JOBIM 2018, Marseilles, France (2018)
• Similarities and complementarity of positive feedback circuits and stable motifs in logical regulatory networks. Journées du GT BIOSS, Marseilles, France (2018)
• Reconstruction and signal propagation analysis of the syk signaling network in breast cancer cells. Network Biology (NetBio) track at ECCB, Prague, Czech Republic (2017)
• Efficient identification of qualitative attractors through constraint solving. [BC]2 workshop on logical modelling of biological regulatory networks. Basel, Switzerland (2017)
• Reduction and reversal of discrete models of biological regulatory networks. Seminar at ENS Cachan, France (2017)
• Organization of the 4th CoLoMoTo meeting, Paris, France (2017)
• Reversed logical models for the study of basins of attraction. Journées du GT BIOSS, Montpellier, France (2017)

2011-2015

• Tutorial on logical modelling of regulatory networks. [BC]2, Basel, Switzerland (2015)
• Reduction of Logical Regulatory Networks. BIOSS workshop, Marseilles, France (2015)
• The Syk network in breast cancer cells. Workshop on “Modeling and Cancer”, Montpellier, France (2015)
• Handling large logical models: the role of model reduction. Symbiose seminar at IRISA, Rennes, France (2015)
• Discrete models of large regulatory networks: from algorithmics to applications. University of Montpellier, France (2014)
• co-organizer of the 3e CoLoMoTo meeting, Lausanne, Switzerland (2014)
• LogicalModel : a Java library for the manipulation and conversion of Qualitative Models. 4e meeting COMBINE, Paris, France (2013)
• Proposal for a CoLoMoTo toolbox. 2e meeting CoLoMoTo, Hinxton, U.K. (2012)
• A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties. Rabat, Morocco (2011)

2006-2010

• GINsim : implementation and functionalities. 1st CoLoMoTo meeting, Lisbon, Portugal (2010)
• Logical modeling of biological regulatory networks. M3B seminar at INSA Lyon, France (2010)
• A reduction of logical regulatory graphs preserving essential dynamical properties. CMSB, Bologne, Italy (2009)
• Reducing logical models while preserving essential dynamical properties. Workshop “Discrete models of biological networks : from structure to dynamics”, Marseilles, France (2008)
• Decision diagrams for the representation and analysis of logical models of genetic networks. CMSB, Edinburgh, U.K. (2007)
• Qualitative Dynamical Modeling of Genetic Regulatory Networks. Workshop « Dynamics of Regulatory Networks II », Cuernavaca, Mexico (2007)
• Proposal for Representing Logical Models in SBML. 11th SBML meeting (ICSB workshop), Tokyo, Japan (2006)